iMIRAGE: an R package to impute microRNA expression using protein-coding genes

Deciphering microRNA targets in pancreatic cancer using miRComb R package

MiRNAs are small non-coding RNAs that post-transcriptionally regulate gene expression. They play important roles in cancer but little is known about the specific functions that each miRNA exerts in each type of cancer. More knowledge about their specific targets is needed to better understand the complexity of molecular networks taking part in cancer. In this study we report the miRNA-mRNA inte...

Meta-Analysis in R Using Package rmeta

Meta-Analysis means a statistical analysis on the results of their findings is to combine a large number of independent studies. Meta-Analysis software is needed to be done for convenience, Statistical Software for Meta-Analysis is available in many statistical packages available in the present study provide software R is for Meta-Analysis. First, a brief description of the Meta-Analysis, Stati...

An Integrated Genetic Analysis Package Using R

GenRank: an R/Bioconductor package for prioritization of candidate genes

Summary: Modern high-throughput studies often yield long lists of genes, of which a fraction are of high relevance to the phenotype of interest. To prioritize the candidate genes of complex genetic traits, our R/Bioconductor package GenRank provides methods that are based on convergent evidence obtained from multiple independent evidence layers. The package facilitates an extensible framework t...

MethylMix: an R package for identifying DNA methylation-driven genes

UNLABELLED DNA methylation is an important mechanism regulating gene transcription, and its role in carcinogenesis has been extensively studied. Hyper and hypomethylation of genes is an alternative mechanism to deregulate gene expression in a wide range of diseases. At the same time, high-throughput DNA methylation assays have been developed generating vast amounts of genome wide DNA methylatio...